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	<title>diving &#8211; #NTNUmedicine</title>
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		<title>Proteomics applied to Decompression Sickness: a story of parts and wholes</title>
		<link>/en/proteomics-applied-to-decompression-sickness-a-story-of-parts-and-wholes/</link>
		
		<dc:creator><![CDATA[@NTNUhealth]]></dc:creator>
		<pubDate>Wed, 08 May 2019 08:16:00 +0000</pubDate>
				<category><![CDATA[NTNUhealth]]></category>
		<category><![CDATA[champagne]]></category>
		<category><![CDATA[DCS]]></category>
		<category><![CDATA[Decompression sickness]]></category>
		<category><![CDATA[diving]]></category>
		<category><![CDATA[engine]]></category>
		<category><![CDATA[ISB]]></category>
		<category><![CDATA[proteomics]]></category>
		<guid isPermaLink="false">/?p=18435</guid>

					<description><![CDATA[A diver ascending from a dive too quickly can be viewed as a bottle of champagne being opened: a pressure differential appears between the gas phase dissolved within the diver’s tissues (the champagne inside the bottle) and the environment’s gas phase (the air now in contact with the champagne). As a result, the gas dissolved will expand and form bubbles until a state of equilibrium is achieved. However, an important difference is to be made between the diver and the bottle of champagne: bubbles are required for good champagne, but not so much for a healthy diver…]]></description>
										<content:encoded><![CDATA[<p>By<a href="https://www.ntnu.edu/employees/jacky.lautridou"> Jacky Lautridou</a>,  Postdoctoral Fellow, Department of Circulation and Medical Imaging.</p>
<h2>Decompression sickness: to consume with moderation.</h2>
<p>Decompression Sickness (DCS) is a very serious hazard for divers, and for pretty much any profession subjected to rapid variations of environmental pressure. An individual in DCS may display a wide set of symptoms, ranging from skin rash and musculoskeletal pain to limb paralysis, coma and death.</p>
<p>A diver ascending from a dive too quickly can be viewed as a bottle of champagne being opened: a pressure differential appears between the gas phase dissolved within the diver’s tissues (the champagne inside the bottle) and the environment’s gas phase (the air now in contact with the champagne). As a result, the gas dissolved will expand and form bubbles until a state of equilibrium is achieved. However, an important difference is to be made between the diver and the bottle of champagne: bubbles are required for good champagne, but not so much for a healthy diver…</p>
<p><a href="/wp-content/uploads/2019/05/bubbles.jpg"><img class="aligncenter size-full wp-image-18436" src="/wp-content/uploads/2019/05/bubbles.jpg" alt="Bubbles" width="1386" height="617" srcset="/wp-content/uploads/2019/05/bubbles.jpg 1386w, /wp-content/uploads/2019/05/bubbles-300x134.jpg 300w, /wp-content/uploads/2019/05/bubbles-1024x456.jpg 1024w, /wp-content/uploads/2019/05/bubbles-1170x521.jpg 1170w, /wp-content/uploads/2019/05/bubbles-585x260.jpg 585w" sizes="(max-width: 1386px) 100vw, 1386px" /></a></p>
<p>Various physiological mechanisms have been highlighted during DCS onset, which makes DCS a difficult pathology to investigate. A lot has already been done regarding the study of these physiological mechanisms, and we know now plenty about Reactive Oxygen Species production during diving, vascular dysfunction, thrombosis and so on. But still, we do not really understand DCS. Why?</p>
<h2>Human physiology: when parts make up wholes.</h2>
<p>Before diving into human physiology, let’s take a peek under the hood and have a look at how an engine works:</p>
<p><a href="/wp-content/uploads/2019/05/engine.jpg"><img loading="lazy" class="aligncenter size-full wp-image-18437" src="/wp-content/uploads/2019/05/engine.jpg" alt="Engine" width="1282" height="1105" srcset="/wp-content/uploads/2019/05/engine.jpg 1282w, /wp-content/uploads/2019/05/engine-300x259.jpg 300w, /wp-content/uploads/2019/05/engine-1024x883.jpg 1024w, /wp-content/uploads/2019/05/engine-1170x1008.jpg 1170w, /wp-content/uploads/2019/05/engine-585x504.jpg 585w" sizes="(max-width: 1282px) 100vw, 1282px" /></a></p>
<p>Each component seen above is essential for the engine to function properly. Each of these components, or parts, has specific properties such as size, weight, composition, form, but also the ability to rotate, slide, or even stay in place. The interesting thing is that none of them is able to transform fuel into movement. The engine does. The specific association of all these parts to make the engine, the whole, allows for additional properties that did not exist in the first place, that could be called “emergent properties. If one of the parts should fail, these emergent properties could disappear.</p>
<p>The human body functions in a same manner: with parts making up wholes, these wholes being parts of even bigger wholes. That is what is called integrative physiology. Understanding the structure and function of all the parts is not enough to comprehend the bigger picture. We need to understand the interplay between all the parts to understand the emergent properties of the whole.</p>
<p>Back to the study of DCS: even though we know how specific physiological mechanisms can be involved in DCS onset, we still do not understand the interplay between them. We lack integrative data. We lack knowledge about the relation between the parts and the emergent properties that fails during diving. We lack tools to look at the bigger picture.</p>
<h2>Proteomics: looking at the parts to understand the whole.</h2>
<p>In our parts-whole analogy, proteins could be considered as one of the smallest entities in body to have emergent properties. Being the end product of gene expression, they give us an accurate picture of what is going on in the body at a given time. Consequently, study them in a context of diving would allow for a deeper level of understanding of the ongoing processes during DCS onset.</p>
<p>Proteomics is a technique that gives us a way to look at such a deep level without any <em>a priori</em> bias. Proteomics does not look at a few proteins at a time; it gives us the ability to look at ALL the proteins simultaneously. Such insights as such a deep level of integration is fundamental to understand the interplay between all the various physiological mechanisms modified or failing during DCS.</p>
<div id="attachment_18438" style="width: 1396px" class="wp-caption aligncenter"><a href="/wp-content/uploads/2019/05/Representative-2de-gels.png"><img aria-describedby="caption-attachment-18438" loading="lazy" class="wp-image-18438 size-full" src="/wp-content/uploads/2019/05/Representative-2de-gels.png" alt="Representative 2DE Gels for plasma proteins." width="1386" height="564" srcset="/wp-content/uploads/2019/05/Representative-2de-gels.png 1386w, /wp-content/uploads/2019/05/Representative-2de-gels-300x122.png 300w, /wp-content/uploads/2019/05/Representative-2de-gels-1024x417.png 1024w, /wp-content/uploads/2019/05/Representative-2de-gels-1170x476.png 1170w, /wp-content/uploads/2019/05/Representative-2de-gels-585x238.png 585w" sizes="(max-width: 1386px) 100vw, 1386px" /></a><p id="caption-attachment-18438" class="wp-caption-text">Representative 2DE Gels (pH 4-7, SDS-PAGE 12%) for Rattus norvegicus plasma proteins form DCS group (A) and asymptomatic group (B). (Figure from Lautridou et al., Proteomics Clinical Applications, 2016).</p></div>
<p>The NTNU barophysiology group is working with proteomics in collaboration with several other teams in Europe since 2015. An ongoing collaboration with Malta aims at finding a specific biomarker of DCS early development that could help discriminate between healthy divers and divers in DCS. This study could also help us better understand the physiological modifications involved during the onset of this pathology by highlighting a set of proteins involved in similar responses; inflammatory processes for example.</p>
<h3><em>Links to the previous proteomics studies:</em></h3>
<p><strong>Rat study</strong>: <a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/prca.201600017">Effect of simulated air dive and decompression sickness on the plasma proteome of rats.</a></p>
<p><strong>Human study</strong>: <a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/prca.201700016">Evolution of the plasma proteome of divers before and after a single SCUBA dive.</a></p>
<p>&nbsp;</p>
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		<title>What the immune system is up to while you’re holding your breath</title>
		<link>/en/what-the-immune-system-is-up-to-while-youre-holding-your-breath/</link>
					<comments>/en/what-the-immune-system-is-up-to-while-youre-holding-your-breath/#respond</comments>
		
		<dc:creator><![CDATA[@NTNUhealth]]></dc:creator>
		<pubDate>Wed, 21 Dec 2016 12:05:03 +0000</pubDate>
				<category><![CDATA[Blood]]></category>
		<category><![CDATA[Inflammatory and Immune System]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[Barophysiology]]></category>
		<category><![CDATA[diving]]></category>
		<category><![CDATA[immune response]]></category>
		<category><![CDATA[ISB]]></category>
		<guid isPermaLink="false">/?p=15216</guid>

					<description><![CDATA[Blogger: Ingrid Eftedal, Principal investigator Barophysiology research group, Department of circulation and medical imaging &#160; &#160; White blood cells are essential components of the&#8230;]]></description>
										<content:encoded><![CDATA[<blockquote><p><strong><a href="/wp-content/uploads/2013/12/Ingrid_Eftedal.jpg"><img loading="lazy" class="size-thumbnail wp-image-6999 alignright" src="/wp-content/uploads/2013/12/Ingrid_Eftedal-150x150.jpg" alt="Ingrid Eftedal" width="150" height="150" srcset="/wp-content/uploads/2013/12/Ingrid_Eftedal-150x150.jpg 150w, /wp-content/uploads/2013/12/Ingrid_Eftedal-300x300.jpg 300w, /wp-content/uploads/2013/12/Ingrid_Eftedal.jpg 324w" sizes="(max-width: 150px) 100vw, 150px" /></a>Blogger</strong>: <a href="https://www.ntnu.edu/employees/ingrid.eftedal">Ingrid Eftedal</a>, <em>Principal investigator</em><br />
<em><a href="https://www.ntnu.edu/isb/barophysiology">Barophysiology research group</a>, <a href="https://www.ntnu.edu/isb">Department of circulation and medical imaging</a></em></p></blockquote>
<p>&nbsp;</p>
<p>&nbsp;</p>
<p>White blood cells are essential components of the immune system. Without these cells we would not stay healthy for long on a planet where infections thrive. But what are these cells up to when we’re not sick? They are present. And they are active, at all times.</p>
<p>Lean back and breathe in. Hold your breath. It can’t get much easier; what could there possibly here for a scientist to study? Well, there is something.</p>
<p>Evolution has shaped us for the environment we live in, and our environment is never completely static. The immune system is involved in rapid biological adjustments that protect us from harm caused by environmental perturbations. Some perturbations are of a cyclic nature, like those that are linked to the earth’s rotation around the sun and its own axis. In an elegant study published in the journal Nature in 2015, English and German scientists <a href="http://www.nature.com/articles/ncomms8000">identified variations in the immune system that are perfectly aligned with the seasons</a>. Actually, our bodies appear to lie slightly ahead of the seasonal changes: we appear to have a biological memory that fine-tunes the immune system just before the seasons change. Since many common infectious diseases appear in a seasonal pattern, this is an amazing adaptation for life on planet earth. If we speed the cycle up a bit, <a href="http://ajpregu.physiology.org/content/311/4/R637">related effects have been observed over the 24 hrs cycle</a>.</p>
<p>So the immune system shows cyclic variation.</p>
<h3>What happens if we speed it up to the cycle of our breath?</h3>
<p>Most of the time, we breathe without thinking about it. Our cells need oxygen for energy production, and once we have filled our lungs with air, it is the circulatory system &#8211; i.e. the heart, blood vessels and blood &#8211; that distributes oxygen to the cells in all parts of our body. We can all voluntarily hold our breath for a while, but some people do this better than the rest. Freedivers dive while holding their breath; the best of them can hold their breath for over 10 minutes.</p>
<div id="attachment_15212" style="width: 600px" class="wp-caption aligncenter"><a href="/wp-content/uploads/2016/12/Fridykker_apnea-e1482320438339.jpg"><img aria-describedby="caption-attachment-15212" loading="lazy" class="size-full wp-image-15212" src="/wp-content/uploads/2016/12/Fridykker_apnea-e1482320438339.jpg" alt="Freediving competition." width="590" height="393" /></a><p id="caption-attachment-15212" class="wp-caption-text">Eleven-time free-diving world champion Goran Colak during a bout of static apnea; timed breath-holding while immersed in water .We have used blood samples from elite free-diving athletes to examine how white blood cells of the immune system responds to acute reduction in blood oxygen levels. The photo is used with Goran Colak’s permission.</p></div>
<p>In order to understand how white blood cells respond to an altered breathing pattern, we studied some of the world’s best free-diving athletes. We used a simple design: blood samples were drawn from contestants at an international free-diving competition before start, and then again one and three hours after completion of a series of dives where the athletes either lay face down in water or swam close to the surface for as long as they could.</p>
<p>Then the samples were transported to the NTNU Genomic Core Facility where total gene expression in the athletes’ white blood cells was measured by a method called full genome microarray analysis. The analysis results were striking: the activity of more than 5000 genes changed in response to the simple effort of breath-holding. This is almost ¼ of all genes found in human cells. With this amount of data we could dig deeper into cellular biology and calculate which specific types of white blood cells that reacted to breath-holding, and also see finer details in the biological processes going on within the cells.</p>
<div id="attachment_15213" style="width: 600px" class="wp-caption aligncenter"><a href="/wp-content/uploads/2016/12/Fridykker_graf-e1482320482522.png"><img aria-describedby="caption-attachment-15213" loading="lazy" class="size-full wp-image-15213" src="/wp-content/uploads/2016/12/Fridykker_graf-e1482320482522.png" alt="Graph showing white blood cell types in freedivers." width="590" height="307" /></a><p id="caption-attachment-15213" class="wp-caption-text">The figure shows a selection of white blood cell types in samples taken from athlete free-divers. Blue boxes are cell amounts prior to diving, whereas the red and green boxes show the same cells one and three hours after diving. The main changes identified were a marked increase in the amount of neutrophil granulocytes, whereas two types of lymphocytes; CD8-postivie cells and natural killer (NK) cells, decreased. Calculations of relative amounts of specific white blood cell types were done by mathematical deconvolution of global blood gene expression data.</p></div>
<p>The most striking finding we did was a marked increase of the white blood cell type neutrophil granulocytes. These blood cells are programmed for rapid response when the body perceives attacks from intruders; the neutrophils are capable of killing invading cells simply by eating them. But they also have another interesting trait that emerges when oxygen levels drop: neutrophil granulocytes are evolutionary old-timers that stem from an era when the atmosphere contained less oxygen than now, and their modern offspring still prefer environments where the oxygen levels are low. White blood cell types that use more oxygen – like lymphocytes &#8211; were less active in blood drawn after the athletes held their breath. What we observed are likely to be <a href="http://physiolgenomics.physiology.org/content/48/11/795.long">traces of evolutionary history still embedded in our immune system, visible when oxygen levels change</a>. The study was published in November 2016 in the journal Physiological Genomics.</p>
<p>This study was done on healthy athletes.</p>
<h3>Can it be relevant for understanding of human diseases?</h3>
<p>Healthy people normally don’t have to worry about oxygen, but for common diseases like chronic obstructive lung disease (COPD) and sleep apnea, the body’s oxygen supply is limited. These diseases are associated with persistent inflammatory conditions, and increased risk of infections; both indicative of an impaired immune system. If we can use data from healthy individuals to distinguish secondary effects of low oxygen levels from the primary pathology of the disease, this may in turn be helpful for prevention and treatment strategies.</p>
<p>&#8211; And breathe out.</p>
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		<item>
		<title>Minimizing diving risk in extreme environments</title>
		<link>/en/gjor-dykking-i-ekstreme-omgivelser-tryggere/</link>
					<comments>/en/gjor-dykking-i-ekstreme-omgivelser-tryggere/#respond</comments>
		
		<dc:creator><![CDATA[Kari Williamson]]></dc:creator>
		<pubDate>Tue, 16 Oct 2012 12:58:49 +0000</pubDate>
				<category><![CDATA[Cardiovascular]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[Barophysiology]]></category>
		<category><![CDATA[diving]]></category>
		<category><![CDATA[ISB]]></category>
		<guid isPermaLink="false">/gjor-dykking-i-ekstreme-omgivelser-tryggere/</guid>

					<description><![CDATA[With increasing activities in Arctic and Antarctic waters for scientific and commercial purposes, it is becoming ever more important to reduce the risks associated&#8230;]]></description>
										<content:encoded><![CDATA[<div id="yui_patched_v3_11_0_1_1483970308120_781" class="ingress">
<p><a href="/wp-content/uploads/2017/01/Heated_drysuit.gif"><img loading="lazy" class="alignright wp-image-15254 size-full" src="/wp-content/uploads/2017/01/Heated_drysuit.gif" alt="Heated dry-suit" width="229" height="172" /></a></p>
<div id="yui_patched_v3_11_0_1_1483971780989_841" class="ingress">
<p id="yui_patched_v3_11_0_1_1483971780989_840">With increasing activities in Arctic and Antarctic waters for scientific and commercial purposes, it is becoming ever more important to reduce the risks associated with diving in extreme environments. This has been the focus of a recently completed PhD thesis at the Department of Circulation and Medical Imaging (ISB) at NTNU.</p>
</div>
<div class="innholdstekst">
<p>Michael Lang has investigated the physiological effects of diving in extreme environments and has reviewed the underwater performance of some of the equipment necessary to make such dives as safe as possible.</p>
<p>&#8220;Polar diving under ice, for example, is scientifically and politically interesting, yet presents a set of physiological, equipment, training and operational challenges,&#8221; he says.</p>
<p>Lang, who was associated with the Smithsonian Scientific Diving Program and the National Science Foundation Antarctic Program in the USA, has looked at the use of enriched-air nitrox, the use of dive computers, ice-diving regulators and thermal protection of the divers.</p>
<p>In his study of the use of enriched-air nitrox as a compressed-gas breathing medium under pressure, Lang found that in certain depth ranges a higher fraction of oxygen (although not exceeding a PO<sub>2</sub> of 1.6 ATA) and a lower fraction of nitrogen resulted in extended bottom times and a more efficient decompression. Furthermore, the use of nitrox was deemed to be at least as safe as compressed air.</p>
<h3>Technological progress</h3>
<p>Decompression status in extreme-environment diving can now be monitored efficiently through the use of dive computers. Lang found that dive computers are especially useful for multi-level, multi-day repetitive diving or decompression diving.</p>
<p>&#8220;Some dive computers also enable consideration of cold [temperatures] as a decompression stress risk factor, and their functions of ascent rate monitoring, real-time computation of nitrogen balances, air consumption monitoring and profile downloading capability form a solid, reliable basis for diminishing the probability of decompression sickness,&#8221; Lang explains.</p>
<p>One part of diving equipment that sees extra strain in cold environments is the regulator. Special regulators have been devised for ice-diving, but some nevertheless freeze up. Lang expected performance to be brand specific and the findings confirmed that some had lower failure rates than others, but even the best of regulators can freeze up or fail under polar conditions.</p>
<p>Another factor for extending bottom times for ice diving is the use of thermal protection such as electrically heated drysuit undergarments, gloves and socks, and full face masks with dual second stage regulators and isolator valves. This is a subject of Lang&#8217;s on-going research.</p>
<h3>PhD thesis</h3>
<ul>
<li><em><a href="http://ntnu.diva-portal.org/smash/record.jsf?pid=diva2:562165">Diving In Extreme Environments:: The Scientific Diving Experience</a></em></li>
</ul>
</div>
</div>
<div class="innholdstekst"></div>
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